Sequence Similarity Clusters for the Entities in PDB 3VHM

Entity #1 | Chains: A,B,C,D
Avidin protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 2067
95 % 7 26 704 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 8 28 670
70 % 19 41 394
50 % 22 45 446
40 % 155 194 101
30 % 163 203 110

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures