Sequence Similarity Clusters for the Entities in PDB 3VHM

Entity #1 | Chains: A,B,C,D
Avidin protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 1748
95 % 6 25 749 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 7 27 716
70 % 18 40 386
50 % 21 44 443
40 % 21 44 468
30 % 162 202 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures