Sequence Similarity Clusters for the Entities in PDB 3VHM

Entity #1 | Chains: A,B,C,D
Avidin protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 1714
95 % 6 25 734 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.3
PDBFlex
90 % 7 27 697
70 % 18 40 382
50 % 21 44 433
40 % 21 44 462
30 % 162 202 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.