Sequence Similarity Clusters for the Entities in PDB 3VHI

Entity #1 | Chains: A,B,C,D
Avidin protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 1822
95 % 3 26 698 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 3 28 674
70 % 13 41 391
50 % 15 45 443
40 % 15 45 469
30 % 115 203 103

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures