Sequence Similarity Clusters for the Entities in PDB 3VFK

Entity #1 | Chains: A
ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala protein_D, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 321 4
95 % 291 396 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 311 423 6
70 % 330 446 8
50 % 344 467 11
40 % 357 491 16
30 % 646 1044 9
Entity #2 | Chains: G
MonodeChloro- Teicoplanin A2-2 protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures