Sequence Similarity Clusters for the Entities in PDB 3VFK

Entity #1 | Chains: A
ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala protein_D, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 318 4
95 % 289 391 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 309 418 6
70 % 328 441 8
50 % 342 462 11
40 % 355 486 16
30 % 643 1038 9
Entity #2 | Chains: G
MonodeChloro- Teicoplanin A2-2 protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.