Sequence Similarity Clusters for the Entities in PDB 3VFJ

Entity #1 | Chains: A
Maltose-binding periplasmic protein, C-terminal fused by Cys-Lys-D-Ala-D-Ala protein, length: 378 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 60 346
95 % 43 112 216 Flexibility: Low
Max RMSD: 8.8, Avg RMSD: 2.1
PDBFlex
90 % 44 132 151
70 % 63 180 92
50 % 63 180 129
40 % 63 180 145
30 % 74 197 144
Entity #2 | Chains: G
MonodeChloro- Teicoplanin A2-2 protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.