Sequence Similarity Clusters for the Entities in PDB 3VEP

Entity #1 | Chains: C,G,J,X
Uncharacterized protein Rv3413c/MT3522 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18115
95 % 1 1 16646 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 1 16270
70 % 1 1 15169
50 % 1 1 13323
40 % 1 1 11931
30 % 1 1 10098
Entity #2 | Chains: A,D,E,H
Probable RNA polymerase sigma-D factor protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14483
95 % 2 2 13590 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 2 13352
70 % 2 2 12514
50 % 2 2 11132
40 % 2 2 10005
30 % 2 2 8539

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures