Sequence Similarity Clusters for the Entities in PDB 3VEP

Entity #1 | Chains: C,G,J,X
Uncharacterized protein Rv3413c/MT3522 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25187
95 % 1 1 21430 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 1 20811
70 % 1 1 19101
50 % 1 1 16555
40 % 1 1 14749
30 % 1 1 12613
Entity #2 | Chains: A,D,E,H
Probable RNA polymerase sigma-D factor protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14625
95 % 2 2 13839 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 2 2 13609
70 % 2 2 12775
50 % 2 2 11390
40 % 2 2 10317
30 % 2 2 8991

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures