Sequence Similarity Clusters for the Entities in PDB 3VDM

Entity #1 | Chains: A,B
VldE protein, length: 497 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 2890
95 % 3 7 3605 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.7
PDBFlex
90 % 3 7 3656
70 % 3 7 3597
50 % 3 7 3507
40 % 3 7 3386
30 % 3 7 3158

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.