Sequence Similarity Clusters for the Entities in PDB 3VDM

Entity #1 | Chains: A,B
VldE protein, length: 497 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 3052
95 % 3 7 3766 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 3 7 3816
70 % 3 7 3760
50 % 3 7 3649
40 % 3 7 3514
30 % 3 7 3286

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures