Sequence Similarity Clusters for the Entities in PDB 3VD1

Entity #1 | Chains: A,B,C,D,I,J,K,L
Tumor protein p73 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 909
95 % 5 10 1160 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 5 10 1189
70 % 8 15 744
50 % 97 106 162
40 % 97 106 179
30 % 97 106 191
Entity #2 | Chains: E,F,G,H,M,N,O,P
DNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures