Sequence Similarity Clusters for the Entities in PDB 3VAM

Entity #1 | Chains: A,B
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 2060
95 % 8 12 2323 Flexibility: Medium
Max RMSD: 9.3, Avg RMSD: 5.1
PDBFlex
90 % 8 12 2387
70 % 12 18 1842
50 % 12 18 1869
40 % 12 18 1875
30 % 12 18 1812
Entity #2 | Chains: E,P
DNA (5'-D(*UP*CP*UP*UP*(BRU)P*UP*U)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.