Sequence Similarity Clusters for the Entities in PDB 3VAM

Entity #1 | Chains: A,B
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 2551
95 % 8 12 2506 Flexibility: Medium
Max RMSD: 9.3, Avg RMSD: 5.1
PDBFlex
90 % 8 12 2582
70 % 12 18 1986
50 % 12 18 2020
40 % 12 18 1993
30 % 12 18 1900
Entity #2 | Chains: E,P
DNA (5'-D(*UP*CP*UP*UP*(BRU)P*UP*U)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures