Sequence Similarity Clusters for the Entities in PDB 3VAL

Entity #1 | Chains: A,B,D,I
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 11 2089
95 % 10 12 2340 Flexibility: Medium
Max RMSD: 9.3, Avg RMSD: 5.1
PDBFlex
90 % 10 12 2404
70 % 14 18 1859
50 % 14 18 1887
40 % 14 18 1891
30 % 14 18 1827
Entity #2 | Chains: E,H,K,P
DNA (5'-D(*C*UP*UP*UP*(BRU)P*UP*U)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.