Sequence Similarity Clusters for the Entities in PDB 3VAL

Entity #1 | Chains: A,B,D,I
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 11 2165
95 % 10 12 2414 Flexibility: Medium
Max RMSD: 9.3, Avg RMSD: 5.1
PDBFlex
90 % 10 12 2481
70 % 14 18 1913
50 % 14 18 1940
40 % 14 18 1947
30 % 14 18 1877
Entity #2 | Chains: E,H,K,P
DNA (5'-D(*C*UP*UP*UP*(BRU)P*UP*U)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures