Sequence Similarity Clusters for the Entities in PDB 3VAK

Entity #1 | Chains: A,B
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 1784
95 % 5 12 2022
90 % 5 12 2074
70 % 9 18 1636
50 % 9 18 1678
40 % 9 18 1700
30 % 9 18 1648
Entity #2 | Chains: E,P
DNA (5'-D(*UP*UP*UP*UP*(BRU)P*UP*U)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.