Sequence Similarity Clusters for the Entities in PDB 3VAJ

Entity #1 | Chains: A,B
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 11 1722
95 % 2 12 1968
90 % 2 12 2016
70 % 5 18 1589
50 % 5 18 1638
40 % 5 18 1665
30 % 5 18 1605
Entity #2 | Chains: E,P
DNA (5'-D(*UP*UP*UP*UP*(BRU)P*CP*U)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.