Sequence Similarity Clusters for the Entities in PDB 3VAJ

Entity #1 | Chains: A,B
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 2106
95 % 2 12 2360 Flexibility: Medium
Max RMSD: 9.3, Avg RMSD: 5.1
PDBFlex
90 % 2 12 2428
70 % 5 18 1869
50 % 5 18 1902
40 % 5 18 1906
30 % 5 18 1838
Entity #2 | Chains: E,P
DNA (5'-D(*UP*UP*UP*UP*(BRU)P*CP*U)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures