Sequence Similarity Clusters for the Entities in PDB 3VAH

Entity #1 | Chains: A,B
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 2743
95 % 9 12 2678 Flexibility: Medium
Max RMSD: 9.3, Avg RMSD: 5.1
PDBFlex
90 % 9 12 2741
70 % 13 18 2149
50 % 13 18 2161
40 % 13 18 2129
30 % 13 18 2017
Entity #2 | Chains: E,P
DNA 5'-D(P*UP*UP*(BRU)P*CP*UP*UP*U)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4TU8 1 A, B Splicing factor U2AF 65 kDa subunit UNP residues 148-336 9606
2 3VAJ 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
3 4TU9 1 A, B Splicing factor U2AF 65 kDa subunit UNP residues 148-336 9606
4 4TU7 1 A, B Splicing factor U2AF 65 kDa subunit 9606
5 3VAK 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
6 3VAG 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
7 3VAI 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
8 3VAM 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
9 3VAH 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
10 3VAL 1 A, B, D, I Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
11 3VAF 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
12 2G4B 2 A Splicing factor U2AF 65 kDa subunit RNA binding domain 9606