Sequence Similarity Clusters for the Entities in PDB 3VAH

Entity #1 | Chains: A,B
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 2624
95 % 9 12 2565 Flexibility: Medium
Max RMSD: 9.3, Avg RMSD: 5.1
PDBFlex
90 % 9 12 2636
70 % 13 18 2048
50 % 13 18 2079
40 % 13 18 2057
30 % 13 18 1952
Entity #2 | Chains: E,P
DNA 5'-D(P*UP*UP*(BRU)P*CP*UP*UP*U)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5EV3 1 A Splicing factor U2AF 65 kDa subunit UNP residues 141-341 9606
2 5EV4 1 A Splicing factor U2AF 65 kDa subunit UNP RESIDUES 141-341 9606
3 5EV2 1 A Splicing factor U2AF 65 kDa subunit 5' PHOSPHORYLATION UNP residues 141-341 9606
4 4TU8 1 A, B Splicing factor U2AF 65 kDa subunit UNP residues 148-336 9606
5 3VAJ 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
6 5EV1 1 A Splicing factor U2AF 65 kDa subunit UNP residues 141-341 9606
7 4TU9 1 A, B Splicing factor U2AF 65 kDa subunit UNP residues 148-336 9606
8 4TU7 1 A, B Splicing factor U2AF 65 kDa subunit 9606
9 3VAK 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
10 3VAG 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
11 3VAI 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
12 3VAM 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
13 3VAH 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
14 3VAL 1 A, B, D, I Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
15 3VAF 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
16 2G4B 2 A Splicing factor U2AF 65 kDa subunit RNA binding domain 9606
17 2YH0 1 A SPLICING FACTOR U2AF 65 KDA SUBUNIT TANDEM RRM1 AND RRM2 DOMAINS JOINED BY NATIVE LINKER, RESIDUES 148-342 9606
18 2YH1 1 A SPLICING FACTOR U2AF 65 KDA SUBUNIT STRUCTURE BASED ON DATA FROM TEN CYSTEINE MUTANTS (N155C, A164C, A171C, L187C, A188C, T209C, D273C, S281C, A287C AND A318C) COVALENTLY MODIFIED BY 3-(2-IODOACETAMIDO)-2,2,5,5, TETRAMETHYL-1-PYRROLIDINYLOXY RADICAL (IODOACETAMIDO-PROXYL) TANDEM RRM1 AND RRM2 DOMAINS JOINED BY NATIVE LINKER, RESIDUES 148-342 9606