Sequence Similarity Clusters for the Entities in PDB 3VAH

Entity #1 | Chains: A,B
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 2711
95 % 9 12 2650 Flexibility: Medium
Max RMSD: 9.3, Avg RMSD: 5.1
PDBFlex
90 % 9 12 2713
70 % 13 18 2130
50 % 13 18 2141
40 % 13 18 2113
30 % 13 18 2002
Entity #2 | Chains: E,P
DNA 5'-D(P*UP*UP*(BRU)P*CP*UP*UP*U)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4TU8 1 A, B Splicing factor U2AF 65 kDa subunit UNP residues 148-336 9606
2 3VAJ 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
3 4TU9 1 A, B Splicing factor U2AF 65 kDa subunit UNP residues 148-336 9606
4 3VAK 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
5 3VAG 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
6 3VAI 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
7 3VAM 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
8 3VAH 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
9 3VAL 1 A, B, D, I Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
10 3VAF 1 A, B Splicing factor U2AF 65 kDa subunit RNA Binding Domains 1 and 2 9606
11 2G4B 2 A Splicing factor U2AF 65 kDa subunit RNA binding domain 9606