Sequence Similarity Clusters for the Entities in PDB 3VAG

Entity #1 | Chains: A,B
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 1756
95 % 6 12 1998
90 % 6 12 2048
70 % 10 18 1606
50 % 10 18 1658
40 % 10 18 1684
30 % 10 18 1631
Entity #2 | Chains: E,P
DNA 5'-D(*U*CP*(BRU)P*UP*UP*UP*U)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.