Sequence Similarity Clusters for the Entities in PDB 3VAG

Entity #1 | Chains: A,B
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 11 2102
95 % 6 12 2359 Flexibility: Medium
Max RMSD: 9.3, Avg RMSD: 5.1
PDBFlex
90 % 6 12 2424
70 % 10 18 1868
50 % 10 18 1898
40 % 10 18 1901
30 % 10 18 1833
Entity #2 | Chains: E,P
DNA 5'-D(*U*CP*(BRU)P*UP*UP*UP*U)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.