Sequence Similarity Clusters for the Entities in PDB 3VAF

Entity #1 | Chains: A,B
Splicing factor U2AF 65 kDa subunit protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 2523
95 % 11 12 2477 Flexibility: Medium
Max RMSD: 9.3, Avg RMSD: 5.1
PDBFlex
90 % 11 12 2555
70 % 15 18 1973
50 % 15 18 2002
40 % 15 18 1982
30 % 15 18 1891
Entity #2 | Chains: E,P
DNA 5'-D(*UP*UP*(BRU)P*(BRU)P*UP*UP*U)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures