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An Information Portal to 110071 Biological Macromolecular Structures

Crystal structure of HIV-1 reverse transcriptase (RT) with DNA and the nonnucleoside inhibitor nevirapine
Sequence Clustering and Redundancy Reduction Results
3V81
Sequence Clusters for the Sequence Entities in PDB 3V81
Entity #1: Chains: A,C - HIV-1 Reverse Transcriptase P66 subunit protein, length: 556 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 8 2399
95% 162 208 80
90% 162 208 83
70% 162 208 101
50% 163 209 139
40% 163 209 154
30% 163 209 171
Entity #2: Chains: B,D - HIV-1 Reverse Transcriptase P51 subunit protein, length: 428 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 73 238
95% 157 202 87
90% 157 202 92
70% 157 202 112
50% 158 203 146
40% 158 203 163
30% 158 203 182
Entity #3: Chains: E,T - DNA (5'-D(*AP*TP*GP*GP*AP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F,P - DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3') dna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.