Sequence Similarity Clusters for the Entities in PDB 3V7K

Entity #1 | Chains: A
DNA polymerase beta protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27340
95 % 194 337 77 Flexibility: Medium
Max RMSD: 14.0, Avg RMSD: 3.0
PDBFlex
90 % 194 337 82
70 % 194 337 101
50 % 194 337 136
40 % 194 337 152
30 % 287 467 113
Entity #2 | Chains: P
DNA (5'-D(P*AP*TP*GP*TP*GP*AP*GP*T)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: T
DNA (5'-D(P*CP*AP*AP*AP*CP*TP*CP*AP*CP*AP*A)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures