Sequence Similarity Clusters for the Entities in PDB 3V7K

Entity #1 | Chains: A
DNA polymerase beta protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36439
95 % 179 322 81 Flexibility: Medium
Max RMSD: 14.0, Avg RMSD: 3.1
PDBFlex
90 % 179 322 84
70 % 179 322 102
50 % 179 322 141
40 % 179 322 153
30 % 272 452 110
Entity #2 | Chains: P
DNA (5'-D(P*AP*TP*GP*TP*GP*AP*GP*T)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: T
DNA (5'-D(P*CP*AP*AP*AP*CP*TP*CP*AP*CP*AP*A)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures