Sequence Similarity Clusters for the Entities in PDB 3V7A

Entity #1 | Chains: E,F
5B18 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40929
95 % 1 1 31320 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 2 18279
70 % 2049 2376 2
50 % 4244 4913 1
40 % 4244 4913 1
30 % 5028 5780 1
Entity #2 | Chains: G,H
5B18 kappa chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41683
95 % 26 26 1058 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 35 37 784
70 % 2093 2426 1
50 % 4245 4913 1
40 % 4245 4913 1
30 % 5029 5780 1
Entity #3 | Chains: A,B
Capsid protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 30 635
95 % 30 30 863 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.5
PDBFlex
90 % 30 30 894
70 % 41 41 677
50 % 82 82 251
40 % 105 105 205
30 % 111 111 210

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures