Sequence Similarity Clusters for the Entities in PDB 3V7A

Entity #1 | Chains: E,F
5B18 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35750
95 % 1 1 30496 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 2 17380
70 % 2124 2478 2
50 % 4381 5107 1
40 % 4919 5756 1
30 % 6141 7175 1
Entity #2 | Chains: G,H
5B18 kappa chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44619
95 % 26 26 1078 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 35 37 796
70 % 2158 2519 1
50 % 4382 5107 1
40 % 4920 5756 1
30 % 6142 7175 1
Entity #3 | Chains: A,B
Capsid protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 30 708
95 % 30 30 869 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.5
PDBFlex
90 % 30 30 900
70 % 41 41 687
50 % 82 82 258
40 % 109 109 209
30 % 111 111 227

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures