Sequence Similarity Clusters for the Entities in PDB 3V7A

Entity #1 | Chains: E,F
5B18 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35910
95 % 1 1 30622 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 2 17441
70 % 2134 2497 2
50 % 4407 5152 1
40 % 4949 5806 1
30 % 6186 7240 1
Entity #2 | Chains: G,H
5B18 kappa chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44823
95 % 26 26 1087 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 35 37 798
70 % 2168 2538 1
50 % 4408 5152 1
40 % 4950 5806 1
30 % 6187 7240 1
Entity #3 | Chains: A,B
Capsid protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 30 713
95 % 30 30 875 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 30 30 907
70 % 41 41 689
50 % 82 82 261
40 % 109 109 209
30 % 111 111 225

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures