Sequence Similarity Clusters for the Entities in PDB 3V7A

Entity #1 | Chains: E,F
5B18 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39756
95 % 1 1 30490 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 2 17766
70 % 1941 2244 2
50 % 4012 4633 1
40 % 4012 4633 1
30 % 4758 5461 1
Entity #2 | Chains: G,H
5B18 kappa chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40487
95 % 26 26 1023 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 35 37 761
70 % 1978 2287 1
50 % 4013 4633 1
40 % 4013 4633 1
30 % 4759 5461 1
Entity #3 | Chains: A,B
Capsid protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 30 610
95 % 30 30 823 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.5
PDBFlex
90 % 30 30 856
70 % 41 41 657
50 % 82 82 236
40 % 105 105 199
30 % 111 111 206

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.