Sequence Similarity Clusters for the Entities in PDB 3V7A

Entity #1 | Chains: E,F
5B18 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39181
95 % 1 1 30032 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 2 17479
70 % 1923 2222 2
50 % 3974 4587 1
40 % 3974 4587 1
30 % 4697 5394 1
Entity #2 | Chains: G,H
5B18 kappa chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39903
95 % 26 26 1016 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 2.0
PDBFlex
90 % 35 37 757
70 % 1959 2264 1
50 % 3975 4587 1
40 % 3975 4587 1
30 % 4698 5394 1
Entity #3 | Chains: A,B
Capsid protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 25 720
95 % 25 25 986 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.5
PDBFlex
90 % 25 25 1014
70 % 35 35 758
50 % 76 76 255
40 % 99 99 202
30 % 105 105 206

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.