Sequence Similarity Clusters for the Entities in PDB 3V79

Entity #1 | Chains: K
Neurogenic locus notch homolog protein 1 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10777
95 % 4 5 10518 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 5 10370
70 % 5 6 6768
50 % 5 6 6266
40 % 5 6 5817
30 % 320 357 34
Entity #2 | Chains: C
Recombining binding protein suppressor of hairless protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35168
95 % 7 8 6996 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 7 8 6965
70 % 8 9 5519
50 % 12 13 3969
40 % 12 13 3761
30 % 12 13 3438
Entity #3 | Chains: M
Mastermind-like protein 1 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 19092
95 % 2 3 17570 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 3 17146
70 % 2 3 15445
50 % 2 3 13581
40 % 2 3 12170
30 % 2 3 10332
Entity #4 | Chains: X
DNA 5'-D(*GP*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*AP*AP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: Y
DNA 5'-D(*TP*TP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*TP*AP*AP*C)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RAM protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2F8X 5 M Mastermind-like protein 1 9606
2 3V79 3 M Mastermind-like protein 1 9606
3 3NBN 3 C, F Mastermind-like protein 1 residues 13-74 9606