Sequence Similarity Clusters for the Entities in PDB 3V79

Entity #1 | Chains: K
Neurogenic locus notch homolog protein 1 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10636
95 % 4 5 10381 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 5 10249
70 % 5 6 6692
50 % 5 6 6212
40 % 5 6 5771
30 % 318 354 32
Entity #2 | Chains: C
Recombining binding protein suppressor of hairless protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34765
95 % 6 7 8911 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 6 7 8829
70 % 7 8 6926
50 % 11 12 4686
40 % 11 12 4428
30 % 11 12 3982
Entity #3 | Chains: M
Mastermind-like protein 1 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 18881
95 % 2 3 17370 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 3 16951
70 % 2 3 15274
50 % 2 3 13433
40 % 2 3 12043
30 % 2 3 10226
Entity #4 | Chains: X
DNA 5'-D(*GP*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*AP*AP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: Y
DNA 5'-D(*TP*TP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*TP*AP*AP*C)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RAM protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YYH 1 A, B Notch 1, ankyrin domain ankyrin domain 9606
2 2HE0 1 A, B Notch1 preproprotein variant Ankyrin Domain, residues 1873-2115 9606
3 1OT8 1 A, B, C Neurogenic locus Notch protein Ankyrin Domain 7227
4 2F8X 4 K Neurogenic locus notch homolog protein 1 [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] 9606
5 3V79 1 K Neurogenic locus notch homolog protein 1 9606
6 3NBN 2 B, E Neurogenic locus notch homolog protein 1 residues 1872-2126 9606