Sequence Similarity Clusters for the Entities in PDB 3V79

Entity #1 | Chains: K
Neurogenic locus notch homolog protein 1 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10842
95 % 4 5 10585 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 5 10430
70 % 5 6 6811
50 % 5 6 6305
40 % 5 6 5853
30 % 320 357 33
Entity #2 | Chains: C
Recombining binding protein suppressor of hairless protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35414
95 % 7 8 7038 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 7 8 7003
70 % 8 9 5559
50 % 12 13 3993
40 % 12 13 3788
30 % 12 13 3465
Entity #3 | Chains: M
Mastermind-like protein 1 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 19225
95 % 2 3 17682 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 3 17256
70 % 2 3 15539
50 % 2 3 13663
40 % 2 3 12244
30 % 2 3 10388
Entity #4 | Chains: X
DNA 5'-D(*GP*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*AP*AP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: Y
DNA 5'-D(*TP*TP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*TP*AP*AP*C)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RAM protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YYH 1 A, B Notch 1, ankyrin domain ankyrin domain 9606
2 2HE0 1 A, B Notch1 preproprotein variant Ankyrin Domain, residues 1873-2115 9606
3 1OT8 1 A, B, C Neurogenic locus Notch protein Ankyrin Domain 7227
4 2F8X 4 K Neurogenic locus notch homolog protein 1 [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] 9606
5 3V79 1 K Neurogenic locus notch homolog protein 1 9606
6 3NBN 2 B, E Neurogenic locus notch homolog protein 1 residues 1872-2126 9606