Sequence Similarity Clusters for the Entities in PDB 3V79

Entity #1 | Chains: K
Neurogenic locus notch homolog protein 1 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17262
95 % 4 5 8862 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 5 8773
70 % 5 6 6376
50 % 5 6 5953
40 % 5 6 5539
30 % 298 326 40
Entity #2 | Chains: C
Recombining binding protein suppressor of hairless protein, length: 434 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33176
95 % 6 7 8458 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 6 7 8385
70 % 7 8 6601
50 % 11 12 4470
40 % 11 12 4221
30 % 11 12 3816
Entity #3 | Chains: M
Mastermind-like protein 1 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17955
95 % 2 3 16513 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 3 16148
70 % 2 3 14631
50 % 2 3 12897
40 % 2 3 11575
30 % 2 3 9825
Entity #4 | Chains: X
DNA 5'-D(*GP*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*AP*AP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: Y
DNA 5'-D(*TP*TP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*TP*AP*AP*C)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RAM protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures