Sequence Similarity Clusters for the Entities in PDB 3V6Z

Entity #1 | Chains: A,C
Fab e6 Heavy Chain protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13032
95 % 2 2 12531 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 2 2 12350
70 % 2061 2342 2
50 % 4266 4843 1
40 % 4266 4843 1
30 % 5059 5705 1
Entity #2 | Chains: B,D
Fab e6 Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13076
95 % 3 3 9412 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.3
PDBFlex
90 % 81 84 301
70 % 2105 2392 1
50 % 4267 4843 1
40 % 4267 4843 1
30 % 5060 5705 1
Entity #3 | Chains: E,F
e-antigen protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44233
95 % 8 14 788 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.9
PDBFlex
90 % 8 14 817
70 % 8 14 855
50 % 8 14 909
40 % 8 14 933
30 % 8 14 915

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures