Sequence Similarity Clusters for the Entities in PDB 3V6Z

Entity #1 | Chains: A,C
Fab e6 Heavy Chain protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13446
95 % 2 2 13626 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 2 2 13392
70 % 2165 2478 2
50 % 4463 5107 1
40 % 5007 5756 1
30 % 6242 7175 1
Entity #2 | Chains: B,D
Fab e6 Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14933
95 % 3 3 10325 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.3
PDBFlex
90 % 88 91 269
70 % 2199 2519 1
50 % 4464 5107 1
40 % 5008 5756 1
30 % 6243 7175 1
Entity #3 | Chains: E,F
e-antigen protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40893
95 % 8 16 688 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.9
PDBFlex
90 % 8 16 721
70 % 8 16 765
50 % 8 16 831
40 % 8 16 854
30 % 8 16 851

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures