Sequence Similarity Clusters for the Entities in PDB 3V6Z

Entity #1 | Chains: A,C
Fab e6 Heavy Chain protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12532
95 % 2 2 12071 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.2
PDBFlex
90 % 2 2 11895
70 % 1958 2222 2
50 % 4044 4587 1
40 % 4044 4587 1
30 % 4780 5392 1
Entity #2 | Chains: B,D
Fab e6 Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12573
95 % 3 3 9097 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 81 83 296
70 % 1994 2264 1
50 % 4045 4587 1
40 % 4045 4587 1
30 % 4781 5392 1
Entity #3 | Chains: E,F
e-antigen protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42638
95 % 8 14 763 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 8 14 790
70 % 8 14 836
50 % 8 14 881
40 % 8 14 906
30 % 8 14 891

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.