Sequence Similarity Clusters for the Entities in PDB 3V6Z

Entity #1 | Chains: A,C
Fab e6 Heavy Chain protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12727
95 % 2 2 12265 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 2 2 12090
70 % 1977 2244 2
50 % 4084 4633 1
40 % 4084 4633 1
30 % 4843 5461 1
Entity #2 | Chains: B,D
Fab e6 Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12770
95 % 3 3 9220 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 81 83 301
70 % 2014 2287 1
50 % 4085 4633 1
40 % 4085 4633 1
30 % 4844 5461 1
Entity #3 | Chains: E,F
e-antigen protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43285
95 % 8 14 765 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 8 14 793
70 % 8 14 838
50 % 8 14 890
40 % 8 14 913
30 % 8 14 896

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.