Sequence Similarity Clusters for the Entities in PDB 3V6Z

Entity #1 | Chains: A,C
Fab e6 Heavy Chain protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13140
95 % 2 2 12627 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 2 2 12441
70 % 2089 2376 2
50 % 4324 4913 1
40 % 4324 4913 1
30 % 5121 5780 1
Entity #2 | Chains: B,D
Fab e6 Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13185
95 % 3 3 9482 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.3
PDBFlex
90 % 81 84 306
70 % 2133 2426 1
50 % 4325 4913 1
40 % 4325 4913 1
30 % 5122 5780 1
Entity #3 | Chains: E,F
e-antigen protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44558
95 % 8 16 679 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.9
PDBFlex
90 % 8 16 711
70 % 8 16 751
50 % 8 16 800
40 % 8 16 838
30 % 8 16 828

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures