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Crystal structure of the bacterial ribosome ram mutation G347U. this entry contains the 50S ribosomal subunit of the second 70S molecule in the asymmetric unit
Sequence Clustering and Redundancy Reduction Results
3V6X
Sequence Clusters for the Sequence Entities in PDB 3V6X
Entity #1: Chains: A - 23S rRNA rna, length: 2916 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: N - 50S ribosomal protein L13 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 146 77
95% 128 146 125
90% 128 146 135
70% 128 146 158
50% 182 265 90
40% 182 265 114
30% 182 266 139
Entity #11: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 132 108
95% 132 151 114
90% 132 151 123
70% 143 173 115
50% 198 296 62
40% 198 297 81
30% 271 402 56
Entity #12: Chains: P - 50S ribosomal protein L15 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 151 69
95% 132 151 112
90% 132 151 121
70% 132 151 146
50% 132 153 192
40% 197 285 95
30% 270 394 62
Entity #13: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 136 102
95% 132 152 106
90% 132 152 114
70% 145 177 111
50% 199 287 73
40% 199 287 94
30% 199 287 116
Entity #14: Chains: R - 50S ribosomal protein L17 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 156 53
95% 133 156 91
90% 133 156 99
70% 133 156 122
50% 198 287 64
40% 198 289 82
30% 198 291 102
Entity #15: Chains: S - 50S ribosomal protein L18 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 132 109
95% 120 132 159
90% 120 132 170
70% 120 132 200
50% 197 284 78
40% 197 284 99
30% 197 284 119
Entity #16: Chains: T - 50S ribosomal protein L19 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 135 104
95% 132 151 113
90% 132 151 122
70% 132 151 147
50% 132 151 196
40% 132 151 231
30% 132 151 245
Entity #17: Chains: U - 50S ribosomal protein L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 143 80
95% 132 151 115
90% 132 151 124
70% 132 151 148
50% 198 290 66
40% 198 291 84
30% 198 291 106
Entity #18: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 151 71
95% 132 151 117
90% 132 151 126
70% 132 151 150
50% 143 179 148
40% 197 285 96
30% 197 285 118
Entity #19: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 158 60
95% 134 159 96
90% 134 159 104
70% 134 159 127
50% 188 270 87
40% 188 270 108
30% 188 272 130
Entity #2: Chains: B - 5S rRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: X - 50S ribosomal protein L23 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 152 64
95% 132 152 107
90% 132 152 115
70% 132 152 141
50% 144 176 154
40% 198 291 87
30% 265 369 73
Entity #21: Chains: Y - 50S ribosomal protein L24 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 151 70
95% 132 151 116
90% 132 151 125
70% 132 151 149
50% 132 153 193
40% 186 265 115
30% 186 267 137
Entity #22: Chains: Z - 50S ribosomal protein L25 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 151 67
95% 133 152 104
90% 133 152 112
70% 133 152 139
50% 133 152 191
40% 133 152 228
30% 133 152 240
Entity #23: Chains: 0 - 50S ribosomal protein L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 136 96
95% 133 152 102
90% 133 152 110
70% 133 152 135
50% 199 288 67
40% 199 288 88
30% 199 288 108
Entity #24: Chains: 1 - 50S ribosomal protein L28 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 126 114
95% 132 148 123
90% 132 148 132
70% 132 148 155
50% 132 148 202
40% 132 148 236
30% 132 148 252
Entity #25: Chains: 2 - 50S ribosomal protein L29 protein, length: 72 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 139 97
95% 124 142 131
90% 124 142 144
70% 124 142 168
50% 124 142 212
40% 178 260 119
30% 190 284 120
Entity #26: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 158 58
95% 133 158 98
90% 133 158 106
70% 133 158 129
50% 133 158 176
40% 198 291 86
30% 198 291 107
Entity #27: Chains: 4 - 50S ribosomal protein L31 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 125 117
95% 115 125 171
90% 115 125 180
70% 115 125 216
50% 118 163 172
40% 118 163 206
30% 118 163 225
Entity #28: Chains: 5 - 50S ribosomal protein L32 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 135 105
95% 124 143 128
90% 124 143 140
70% 124 143 165
50% 138 175 161
40% 192 282 102
30% 192 282 124
Entity #29: Chains: 6 - 50S ribosomal protein L33 protein, length: 54 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 149 76
95% 132 149 122
90% 132 149 131
70% 132 149 153
50% 132 150 199
40% 195 280 104
30% 195 280 126
Entity #3: Chains: C - 50S ribosomal protein L1 protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 66 334
95% 66 90 301
90% 66 91 315
70% 66 91 338
50% 67 128 240
40% 67 128 269
30% 73 170 210
Entity #30: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 151 73
95% 132 151 119
90% 132 151 128
70% 132 151 152
50% 132 151 197
40% 132 151 232
30% 132 151 246
Entity #31: Chains: 8 - 50S ribosomal protein L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 151 72
95% 132 151 118
90% 132 151 127
70% 132 151 151
50% 143 177 152
40% 143 177 182
30% 143 177 205
Entity #32: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 105 184
95% 84 105 262
90% 84 105 273
70% 95 131 206
50% 149 238 109
40% 149 238 132
30% 149 238 152
Entity #4: Chains: D - 50S ribosomal protein L2 protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 151 65
95% 132 151 108
90% 132 151 116
70% 143 173 114
50% 197 283 79
40% 197 283 100
30% 197 283 122
Entity #5: Chains: E - 50S ribosomal protein L3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 151 66
95% 132 151 110
90% 132 151 118
70% 132 151 144
50% 198 288 72
40% 198 288 93
30% 198 289 114
Entity #6: Chains: F - 50S ribosomal protein L4 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 135 103
95% 132 151 109
90% 132 151 117
70% 132 151 143
50% 145 178 150
40% 145 178 178
30% 200 290 109
Entity #7: Chains: G - 50S ribosomal protein L5 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 136 98
95% 133 152 105
90% 133 152 113
70% 144 174 113
50% 199 288 68
40% 199 288 89
30% 199 288 110
Entity #8: Chains: H - 50S ribosomal protein L6 protein, length: 180 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 151 68
95% 132 151 111
90% 132 151 120
70% 132 151 145
50% 142 183 147
40% 196 292 85
30% 269 397 61
Entity #9: Chains: I - 50S ribosomal protein L9 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 100 199
95% 114 122 176
90% 114 122 186
70% 114 122 221
50% 117 127 255
40% 162 231 137
30% 162 231 158
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.