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Crystal structure of the bacterial ribosome ram mutation G347U. this entry contains the 50S ribosomal subunit of the first 70S molecule in the asymmetric unit
Sequence Clustering and Redundancy Reduction Results
3V6W
Sequence Clusters for the Sequence Entities in PDB 3V6W
Entity #1: Chains: A - 23S rRNA rna, length: 2916 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: N - 50S ribosomal protein L13 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 146 77
95% 127 146 125
90% 127 146 135
70% 127 146 158
50% 181 265 90
40% 181 265 114
30% 181 266 139
Entity #11: Chains: O - 50S ribosomal protein L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 132 108
95% 131 151 114
90% 131 151 123
70% 142 173 115
50% 197 296 62
40% 197 297 81
30% 270 402 56
Entity #12: Chains: P - 50S ribosomal protein L15 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 151 69
95% 131 151 112
90% 131 151 121
70% 131 151 146
50% 131 153 192
40% 196 285 95
30% 269 394 62
Entity #13: Chains: Q - 50S ribosomal protein L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 136 102
95% 131 152 106
90% 131 152 114
70% 144 177 111
50% 198 287 73
40% 198 287 94
30% 198 287 116
Entity #14: Chains: R - 50S ribosomal protein L17 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 156 53
95% 132 156 91
90% 132 156 99
70% 132 156 122
50% 197 287 64
40% 197 289 82
30% 197 291 102
Entity #15: Chains: S - 50S ribosomal protein L18 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 132 109
95% 119 132 159
90% 119 132 170
70% 119 132 200
50% 196 284 78
40% 196 284 99
30% 196 284 119
Entity #16: Chains: T - 50S ribosomal protein L19 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 135 104
95% 131 151 113
90% 131 151 122
70% 131 151 147
50% 131 151 196
40% 131 151 231
30% 131 151 245
Entity #17: Chains: U - 50S ribosomal protein L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 143 80
95% 131 151 115
90% 131 151 124
70% 131 151 148
50% 197 290 66
40% 197 291 84
30% 197 291 106
Entity #18: Chains: V - 50S ribosomal protein L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 151 71
95% 131 151 117
90% 131 151 126
70% 131 151 150
50% 142 179 148
40% 196 285 96
30% 196 285 118
Entity #19: Chains: W - 50S ribosomal protein L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 158 60
95% 133 159 96
90% 133 159 104
70% 133 159 127
50% 187 270 87
40% 187 270 108
30% 187 272 130
Entity #2: Chains: B - 5S rRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: X - 50S ribosomal protein L23 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 152 64
95% 131 152 107
90% 131 152 115
70% 131 152 141
50% 143 176 154
40% 197 291 87
30% 264 369 73
Entity #21: Chains: Y - 50S ribosomal protein L24 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 151 70
95% 131 151 116
90% 131 151 125
70% 131 151 149
50% 131 153 193
40% 185 265 115
30% 185 267 137
Entity #22: Chains: Z - 50S ribosomal protein L25 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 151 67
95% 132 152 104
90% 132 152 112
70% 132 152 139
50% 132 152 191
40% 132 152 228
30% 132 152 240
Entity #23: Chains: 0 - 50S ribosomal protein L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 136 96
95% 132 152 102
90% 132 152 110
70% 132 152 135
50% 198 288 67
40% 198 288 88
30% 198 288 108
Entity #24: Chains: 1 - 50S ribosomal protein L28 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 126 114
95% 131 148 123
90% 131 148 132
70% 131 148 155
50% 131 148 202
40% 131 148 236
30% 131 148 252
Entity #25: Chains: 2 - 50S ribosomal protein L29 protein, length: 72 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 139 97
95% 123 142 131
90% 123 142 144
70% 123 142 168
50% 123 142 212
40% 177 260 119
30% 189 284 120
Entity #26: Chains: 3 - 50S ribosomal protein L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 158 58
95% 132 158 98
90% 132 158 106
70% 132 158 129
50% 132 158 176
40% 197 291 86
30% 197 291 107
Entity #27: Chains: 4 - 50S ribosomal protein L31 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 114 125 117
95% 114 125 171
90% 114 125 180
70% 114 125 216
50% 117 163 172
40% 117 163 206
30% 117 163 225
Entity #28: Chains: 5 - 50S ribosomal protein L32 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 135 105
95% 123 143 128
90% 123 143 140
70% 123 143 165
50% 137 175 161
40% 191 282 102
30% 191 282 124
Entity #29: Chains: 6 - 50S ribosomal protein L33 protein, length: 54 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 149 76
95% 131 149 122
90% 131 149 131
70% 131 149 153
50% 131 150 199
40% 194 280 104
30% 194 280 126
Entity #3: Chains: C - 50S ribosomal protein L1 protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 66 334
95% 65 90 301
90% 65 91 315
70% 65 91 338
50% 66 128 240
40% 66 128 269
30% 72 170 210
Entity #30: Chains: 7 - 50S ribosomal protein L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 151 73
95% 131 151 119
90% 131 151 128
70% 131 151 152
50% 131 151 197
40% 131 151 232
30% 131 151 246
Entity #31: Chains: 8 - 50S ribosomal protein L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 151 72
95% 131 151 118
90% 131 151 127
70% 131 151 151
50% 142 177 152
40% 142 177 182
30% 142 177 205
Entity #32: Chains: 9 - 50S ribosomal protein L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 105 184
95% 83 105 262
90% 83 105 273
70% 94 131 206
50% 148 238 109
40% 148 238 132
30% 148 238 152
Entity #4: Chains: D - 50S ribosomal protein L2 protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 151 65
95% 131 151 108
90% 131 151 116
70% 142 173 114
50% 196 283 79
40% 196 283 100
30% 196 283 122
Entity #5: Chains: E - 50S ribosomal protein L3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 151 66
95% 131 151 110
90% 131 151 118
70% 131 151 144
50% 197 288 72
40% 197 288 93
30% 197 289 114
Entity #6: Chains: F - 50S ribosomal protein L4 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 135 103
95% 131 151 109
90% 131 151 117
70% 131 151 143
50% 144 178 150
40% 144 178 178
30% 199 290 109
Entity #7: Chains: G - 50S ribosomal protein L5 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 136 98
95% 132 152 105
90% 132 152 113
70% 143 174 113
50% 198 288 68
40% 198 288 89
30% 198 288 110
Entity #8: Chains: H - 50S ribosomal protein L6 protein, length: 180 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 151 68
95% 131 151 111
90% 131 151 120
70% 131 151 145
50% 141 183 147
40% 195 292 85
30% 268 397 61
Entity #9: Chains: I - 50S ribosomal protein L9 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 100 199
95% 113 122 176
90% 113 122 186
70% 113 122 221
50% 116 127 255
40% 161 231 137
30% 161 231 158
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.