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Crystal structure of the bacterial ribosome ram mutation G347U. this entry contains the 30S ribosomal subunit of the first 70S molecule in the asymmetric unit
Sequence Clustering and Redundancy Reduction Results
3V6U
Sequence Clusters for the Sequence Entities in PDB 3V6U
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 252 29
95% 213 254 48
90% 213 254 51
70% 213 254 63
50% 273 369 34
40% 273 369 48
30% 273 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 255 27
95% 213 255 44
90% 213 255 47
70% 213 255 59
50% 267 363 42
40% 277 403 39
30% 277 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 224 37
95% 213 262 36
90% 213 262 38
70% 267 375 24
50% 267 375 33
40% 267 375 47
30% 267 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 256 24
95% 213 256 42
90% 213 256 45
70% 213 256 57
50% 267 365 39
40% 267 365 53
30% 275 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 254 28
95% 213 254 49
90% 213 254 52
70% 213 254 64
50% 213 254 99
40% 213 254 124
30% 213 254 144
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 258 21
95% 217 263 35
90% 217 263 37
70% 217 263 48
50% 274 376 32
40% 274 376 45
30% 274 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 250 30
95% 213 255 46
90% 213 255 49
70% 213 255 61
50% 213 255 97
40% 213 255 122
30% 267 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 157 62
95% 210 249 51
90% 212 253 53
70% 212 253 65
50% 212 253 100
40% 212 253 126
30% 212 253 146
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 172 49
95% 193 221 64
90% 193 221 68
70% 193 221 81
50% 193 221 116
40% 193 221 144
30% 193 221 166
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 223 38
95% 193 223 63
90% 193 223 67
70% 193 223 80
50% 268 366 38
40% 268 366 52
30% 268 366 75
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 255 25
95% 213 256 39
90% 213 256 43
70% 213 256 55
50% 213 256 96
40% 267 363 55
30% 267 363 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 193 43
95% 213 254 47
90% 213 254 50
70% 213 254 62
50% 213 254 98
40% 213 254 123
30% 213 254 143
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 238 34
95% 211 238 55
90% 211 238 59
70% 211 238 71
50% 211 238 110
40% 211 238 133
30% 211 238 153
Entity #22: Chains: W,Y - tRNA-Phe rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: V - tRNA-fMet rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: X - messenger RNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 219 39
95% 192 219 66
90% 192 219 70
70% 192 219 83
50% 222 282 81
40% 222 282 101
30% 222 282 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 248 32
95% 213 256 40
90% 213 256 44
70% 213 256 56
50% 267 363 40
40% 267 364 54
30% 267 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 255 26
95% 213 255 43
90% 213 255 46
70% 213 255 58
50% 268 367 37
40% 268 367 51
30% 268 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 260 18
95% 221 266 34
90% 221 266 36
70% 221 266 47
50% 221 266 88
40% 221 266 112
30% 247 313 94
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 259 20
95% 214 260 37
90% 214 260 39
70% 214 260 51
50% 241 308 57
40% 241 309 73
30% 241 309 97
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 212 255 23
95% 212 255 41
90% 214 259 40
70% 214 259 52
50% 270 369 36
40% 271 371 49
30% 280 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 142 82
95% 213 255 45
90% 213 255 48
70% 213 255 60
50% 267 363 41
40% 267 363 56
30% 275 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.