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Crystal structure of the bacterial ribosome ram mutation G347U. this entry contains the 30S ribosomal subunit of the first 70S molecule in the asymmetric unit
Sequence Clustering and Redundancy Reduction Results
3V6U
Sequence Clusters for the Sequence Entities in PDB 3V6U
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 265 27
95% 224 267 47
90% 224 267 49
70% 224 267 59
50% 284 382 34
40% 284 382 45
30% 284 387 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 268 25
95% 224 268 43
90% 224 268 45
70% 224 268 55
50% 278 376 41
40% 288 416 40
30% 288 416 52
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 237 35
95% 224 275 35
90% 224 275 37
70% 278 388 24
50% 278 388 33
40% 278 388 44
30% 278 388 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 269 22
95% 224 269 41
90% 224 269 43
70% 224 269 53
50% 278 378 38
40% 278 378 51
30% 286 414 55
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 267 26
95% 224 267 48
90% 224 267 50
70% 224 267 60
50% 224 267 93
40% 224 267 119
30% 224 267 140
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 271 20
95% 228 276 32
90% 228 276 34
70% 228 276 47
50% 285 389 32
40% 285 389 43
30% 285 389 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 263 28
95% 224 268 45
90% 224 268 47
70% 224 268 57
50% 224 268 91
40% 224 268 117
30% 278 376 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 170 53
95% 221 262 49
90% 223 266 51
70% 223 266 61
50% 223 266 94
40% 223 266 120
30% 223 266 142
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 183 47
95% 204 232 61
90% 204 232 64
70% 204 232 78
50% 204 232 113
40% 204 232 138
30% 204 232 158
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 234 37
95% 204 234 59
90% 204 234 63
70% 204 234 77
50% 279 379 37
40% 279 379 49
30% 279 379 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 268 23
95% 224 269 38
90% 224 269 41
70% 224 269 51
50% 224 269 90
40% 278 376 53
30% 278 376 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 185 206 42
95% 224 267 46
90% 224 267 48
70% 224 267 58
50% 224 267 92
40% 224 267 118
30% 224 267 139
Entity #21: Chains: U - 30S ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 249 33
95% 222 249 52
90% 222 249 55
70% 222 249 66
50% 222 249 103
40% 222 249 130
30% 222 249 150
Entity #22: Chains: W,Y - tRNA-Phe rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: V - tRNA-fMet rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: X - messenger RNA rna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 230 38
95% 203 230 62
90% 203 230 65
70% 203 230 79
50% 233 293 73
40% 233 293 97
30% 233 293 118
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 261 29
95% 224 269 39
90% 224 269 42
70% 224 269 52
50% 278 376 39
40% 278 377 52
30% 278 377 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 268 24
95% 224 268 42
90% 224 268 44
70% 224 268 54
50% 279 380 36
40% 279 380 48
30% 279 382 70
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 273 18
95% 232 279 29
90% 232 279 30
70% 232 279 44
50% 232 279 82
40% 232 279 106
30% 258 326 94
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 272 19
95% 225 273 36
90% 225 273 38
70% 225 273 49
50% 252 321 56
40% 252 322 73
30% 252 322 96
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 223 268 21
95% 223 268 40
90% 225 272 39
70% 225 272 50
50% 281 382 35
40% 282 384 46
30% 291 421 51
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 155 76
95% 224 268 44
90% 224 268 46
70% 224 268 56
50% 278 376 40
40% 278 376 54
30% 286 412 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.