Sequence Similarity Clusters for the Entities in PDB 3V6F

Entity #1 | Chains: A,C,E,H
Fab e6 Heavy Chain protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14397
95 % 1 2 14606 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 1 2 14324
70 % 1207 2708 2
50 % 2493 5586 1
40 % 2857 6331 1
30 % 3463 7871 1
Entity #2 | Chains: B,D,F,L
Fab e6 Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16025
95 % 2 3 11085 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 45 91 288
70 % 1216 2750 1
50 % 2494 5586 1
40 % 2858 6331 1
30 % 3464 7871 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4M61 1 A, C Fab A52 light chain 10090
2 3V6F 2 B, D, F, L Fab e6 Light Chain 10090
3 3V6Z 2 B, D Fab e6 Light Chain Fab e6 Light Chain 10090