Sequence Similarity Clusters for the Entities in PDB 3V6F

Entity #1 | Chains: A,C,E,H
Fab e6 Heavy Chain protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14069
95 % 1 2 14261 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 1 2 13994
70 % 1179 2629 2
50 % 2433 5421 1
40 % 2786 6121 1
30 % 3365 7588 1
Entity #2 | Chains: B,D,F,L
Fab e6 Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15656
95 % 2 3 10820 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 45 91 281
70 % 1188 2670 1
50 % 2434 5421 1
40 % 2787 6121 1
30 % 3366 7588 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4M61 1 A, C Fab A52 light chain 10090
2 3V6F 2 B, D, F, L Fab e6 Light Chain 10090
3 3V6Z 2 B, D Fab e6 Light Chain Fab e6 Light Chain 10090