Sequence Similarity Clusters for the Entities in PDB 3V6F

Entity #1 | Chains: A,C,E,H
Fab e6 Heavy Chain protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13504
95 % 1 2 13689 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 1 2 13451
70 % 1120 2497 2
50 % 2312 5152 1
40 % 2653 5806 1
30 % 3222 7240 1
Entity #2 | Chains: B,D,F,L
Fab e6 Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15005
95 % 2 3 10372 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 45 91 270
70 % 1130 2538 1
50 % 2313 5152 1
40 % 2654 5806 1
30 % 3223 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures