Sequence Similarity Clusters for the Entities in PDB 3V5K

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 116 204 53
95 % 154 255 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 171 308 35
70 % 400 727 6
50 % 401 732 6
40 % 425 783 10
30 % 456 909 15
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 360 624 2
95 % 388 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 391 677 4
70 % 476 924 4
50 % 484 946 3
40 % 484 946 7
30 % 484 946 12
Entity #3 | Chains: C,F
HIV-based altered-peptide ligand KVAELVWFL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures