Sequence Similarity Clusters for the Entities in PDB 3V5K

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 178 49
95 % 138 226 58
90 % 151 266 21
70 % 348 617 7
50 % 349 622 7
40 % 365 662 11
30 % 389 775 13
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 311 531 2
95 % 337 572 3
90 % 340 581 4
70 % 417 806 5
50 % 422 824 5
40 % 422 824 9
30 % 422 824 12
Entity #3 | Chains: C,F
HIV-based altered-peptide ligand KVAELVWFL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.