Sequence Similarity Clusters for the Entities in PDB 3V5D

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 98 197 52
95 % 132 246 58
90 % 144 286 36
70 % 337 666 7
50 % 338 671 7
40 % 360 721 10
30 % 384 838 15
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 313 579 2
95 % 340 622 3
90 % 343 631 4
70 % 407 859 5
50 % 415 881 5
40 % 415 881 9
30 % 415 881 14
Entity #3 | Chains: C,F
HIV peptide KVAELVHFL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.