Sequence Similarity Clusters for the Entities in PDB 3V5D

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 176 49
95 % 123 224 56
90 % 134 260 22
70 % 310 608 7
50 % 311 613 7
40 % 326 653 11
30 % 348 766 13
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 284 525 2
95 % 306 563 3
90 % 309 572 3
70 % 371 794 5
50 % 376 812 5
40 % 376 812 9
30 % 376 812 12
Entity #3 | Chains: C,F
HIV peptide KVAELVHFL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.