Sequence Similarity Clusters for the Entities in PDB 3V5D

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 180 49
95 % 125 228 58
90 % 137 268 21
70 % 314 619 7
50 % 315 624 7
40 % 330 665 11
30 % 353 779 13
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 288 534 2
95 % 315 577 3
90 % 318 586 4
70 % 381 811 5
50 % 386 830 5
40 % 386 830 9
30 % 386 830 12
Entity #3 | Chains: C,F
HIV peptide KVAELVHFL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.