Sequence Similarity Clusters for the Entities in PDB 3V5D

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 183 49
95 % 127 232 55
90 % 139 272 33
70 % 318 630 7
50 % 319 635 7
40 % 335 677 11
30 % 359 793 14
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 544 2
95 % 319 587 3
90 % 322 596 4
70 % 385 823 5
50 % 391 843 5
40 % 391 843 9
30 % 391 843 12
Entity #3 | Chains: C,F
HIV peptide KVAELVHFL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.