Sequence Similarity Clusters for the Entities in PDB 3V5D

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 107 212 58
95 % 138 256 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 153 310 36
70 % 365 740 6
50 % 371 754 7
40 % 390 806 9
30 % 419 930 12
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 354 666 2
95 % 363 681 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 366 690 4
70 % 438 944 4
50 % 446 966 3
40 % 446 966 6
30 % 446 966 9
Entity #3 | Chains: C,F
HIV peptide KVAELVHFL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures