Sequence Similarity Clusters for the Entities in PDB 3V4I

Entity #1 | Chains: A,C
HIV-1 Reverse Transcriptase P66 subunit protein, length: 556 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 2893
95 % 128 230 106
90 % 128 230 110
70 % 128 230 127
50 % 129 231 154
40 % 129 231 172
30 % 129 231 187
Entity #2 | Chains: B,D
HIV-1 Reverse Transcriptase P51 subunit protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 87 219
95 % 123 224 116
90 % 123 224 120
70 % 123 224 137
50 % 124 225 164
40 % 124 225 179
30 % 124 225 196
Entity #3 | Chains: E,T
DNA (5'-D(*AP*TP*GP*GP*AP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3') dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F,P
DNA (5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.