Sequence Similarity Clusters for the Entities in PDB 3V0W

Entity #1 | Chains: L
WN1 222-5 Fab (IgG2a) light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28277
95 % 1 2 23543 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.3
PDBFlex
90 % 1 5 10507
70 % 172 2392 1
50 % 358 4843 1
40 % 358 4843 1
30 % 385 5705 1
Entity #2 | Chains: H
WN1 222-5 Fab (IgG2a) heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28015
95 % 1 2 23365 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.5
PDBFlex
90 % 1 2 22631
70 % 174 2342 2
50 % 359 4843 1
40 % 359 4843 1
30 % 386 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures