Sequence Similarity Clusters for the Entities in PDB 3V0W

Entity #1 | Chains: L
WN1 222-5 Fab (IgG2a) light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28859
95 % 1 2 23999 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.3
PDBFlex
90 % 1 5 10759
70 % 183 2474 1
50 % 381 5011 1
40 % 381 5011 1
30 % 433 5941 1
Entity #2 | Chains: H
WN1 222-5 Fab (IgG2a) heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28598
95 % 1 2 23824 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.5
PDBFlex
90 % 1 2 23063
70 % 185 2424 2
50 % 382 5011 1
40 % 382 5011 1
30 % 434 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures