Sequence Similarity Clusters for the Entities in PDB 3V0V

Entity #1 | Chains: B,L
WN1 222-5 Fab (IgG2a) light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27995
95 % 2 2 23328 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.3
PDBFlex
90 % 2 5 10416
70 % 936 2362 1
50 % 1917 4781 1
40 % 1917 4781 1
30 % 2164 5635 1
Entity #2 | Chains: A,H
WN1 222-5 Fab (IgG2a) heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27735
95 % 2 2 23151 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.5
PDBFlex
90 % 2 2 22430
70 % 924 2311 2
50 % 1918 4781 1
40 % 1918 4781 1
30 % 2165 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures