Sequence Similarity Clusters for the Entities in PDB 3UXP

Entity #1 | Chains: A,B
DNA polymerase beta protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18100
95 % 284 306 74 Flexibility: Medium
Max RMSD: 14.0, Avg RMSD: 3.1
PDBFlex
90 % 284 306 76
70 % 284 306 91
50 % 284 306 129
40 % 284 306 144
30 % 375 406 113
Entity #2 | Chains: D,P
DNA 5'-D(P*AP*TP*GP*TP*GP*AP*G)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E,T
DNA 5'-D(P*AP*CP*TP*CP*AP*CP*AP*TP*A)-3' dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.