Sequence Similarity Clusters for the Entities in PDB 3USE

Entity #1 | Chains: S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 2430
95 % 9 11 2467 Flexibility: No
Max RMSD: 9.8, Avg RMSD: 0.5
PDBFlex
90 % 9 11 2525
70 % 9 11 2514
50 % 14 17 1939
40 % 14 17 1940
30 % 14 17 1879
Entity #2 | Chains: L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 4512
95 % 9 12 2211 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 9 12 2269
70 % 9 12 2268
50 % 17 23 1248
40 % 38 65 400
30 % 48 83 327

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.