Sequence Similarity Clusters for the Entities in PDB 3UQY

Entity #1 | Chains: S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 2503
95 % 8 11 2534 Flexibility: No
Max RMSD: 9.8, Avg RMSD: 0.5
PDBFlex
90 % 8 11 2594
70 % 8 11 2582
50 % 9 17 1995
40 % 9 17 1996
30 % 9 17 1924
Entity #2 | Chains: L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 4620
95 % 8 12 2272 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 8 12 2329
70 % 8 12 2334
50 % 12 23 1273
40 % 29 65 423
30 % 36 83 340

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures