Sequence Similarity Clusters for the Entities in PDB 3UQY

Entity #1 | Chains: S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 2534
95 % 8 11 2576 Flexibility: No
Max RMSD: 9.8, Avg RMSD: 0.5
PDBFlex
90 % 8 11 2634
70 % 8 11 2625
50 % 10 20 1827
40 % 10 20 1828
30 % 10 20 1778
Entity #2 | Chains: L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 4718
95 % 8 12 2321 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 8 12 2380
70 % 8 12 2388
50 % 13 26 1211
40 % 30 71 406
30 % 37 89 321

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures