Sequence Similarity Clusters for the Entities in PDB 3UQY

Entity #1 | Chains: S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 2702
95 % 7 10 2718 Flexibility: Low
Max RMSD: 9.9, Avg RMSD: 0.6
PDBFlex
90 % 7 10 2763
70 % 7 10 2744
50 % 8 16 2056
40 % 8 16 2056
30 % 8 20 1985
Entity #2 | Chains: L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 4386
95 % 7 11 2344 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 7 11 2408
70 % 7 11 2397
50 % 11 22 1287
40 % 28 64 399
30 % 35 82 322

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.