Sequence Similarity Clusters for the Entities in PDB 3UQY

Entity #1 | Chains: S,T
Hydrogenase-1 small chain protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 2396
95 % 8 11 2447 Flexibility: Low
Max RMSD: 9.9, Avg RMSD: 0.7
PDBFlex
90 % 8 11 2504
70 % 8 11 2493
50 % 9 17 1924
40 % 9 17 1928
30 % 9 17 1869
Entity #2 | Chains: L,M
Hydrogenase-1 large chain protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 4458
95 % 8 12 2197 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 8 12 2254
70 % 8 12 2250
50 % 12 23 1236
40 % 29 65 398
30 % 36 83 321

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.