Sequence Similarity Clusters for the Entities in PDB 3ULD

Entity #1 | Chains: A
Ribonuclease H protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 24 1217
95 % 9 31 1262 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 9 31 1289
70 % 9 31 1318
50 % 9 31 1370
40 % 9 31 1379
30 % 9 31 1359
Entity #2 | Chains: B
RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(*AP*TP*GP*TP*CP*(PGN))-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures