Sequence Similarity Clusters for the Entities in PDB 3ULD

Entity #1 | Chains: A
Ribonuclease H protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 23 1215
95 % 9 30 1268 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 9 30 1294
70 % 9 30 1313
50 % 9 30 1362
40 % 9 30 1372
30 % 9 30 1354
Entity #2 | Chains: B
RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(*AP*TP*GP*TP*CP*(PGN))-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.