Sequence Similarity Clusters for the Entities in PDB 3UKU

Entity #1 | Chains: A
ACTIN-LIKE PROTEIN 3 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2943
95 % 16 19 3266 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 16 19 3325
70 % 16 19 3277
50 % 16 20 2944
40 % 16 20 2868
30 % 162 274 40
Entity #2 | Chains: B
ACTIN-LIKE PROTEIN 2 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2945
95 % 16 19 3268 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.2
PDBFlex
90 % 16 19 3326
70 % 16 19 3278
50 % 16 19 3210
40 % 147 254 26
30 % 163 274 40
Entity #3 | Chains: C
Actin-related protein 2/3 complex subunit 1B protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2944
95 % 16 19 3267 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 16 19 3399
70 % 16 19 3357
50 % 16 19 3270
40 % 16 20 2911
30 % 16 20 2653
Entity #4 | Chains: D
Actin-related protein 2/3 complex subunit 2 protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2946
95 % 16 19 3269 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 16 19 3327
70 % 16 19 3279
50 % 16 19 3211
40 % 16 20 2869
30 % 16 20 2654
Entity #5 | Chains: E
Actin-related protein 2/3 complex subunit 3 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 3129
95 % 16 19 3431 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 16 19 3492
70 % 16 19 3442
50 % 16 20 2939
40 % 16 20 2862
30 % 16 20 2647
Entity #6 | Chains: F
Actin-related protein 2/3 complex subunit 4 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2948
95 % 16 19 3271 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 16 19 3329
70 % 16 19 3281
50 % 16 20 2938
40 % 16 20 2861
30 % 16 20 2646
Entity #7 | Chains: G
Actin-related protein 2/3 complex subunit 5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2947
95 % 16 19 3270 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 16 19 3328
70 % 16 19 3280
50 % 16 19 3212
40 % 16 19 3121
30 % 16 20 2655

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures