Sequence Similarity Clusters for the Entities in PDB 3UKU

Entity #1 | Chains: A
ACTIN-LIKE PROTEIN 3 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2767
95 % 16 20 3097 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 16 20 3154
70 % 16 20 3111
50 % 16 21 2758
40 % 16 21 2700
30 % 163 280 43
Entity #2 | Chains: B
ACTIN-LIKE PROTEIN 2 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 20 2769
95 % 16 20 3099
90 % 16 20 3155
70 % 16 20 3112
50 % 16 20 3048
40 % 148 259 27
30 % 164 280 43
Entity #3 | Chains: C
Actin-related protein 2/3 complex subunit 1B protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2768
95 % 16 20 3098 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.7
PDBFlex
90 % 16 20 3203
70 % 16 20 3156
50 % 16 20 3093
40 % 16 21 2743
30 % 16 21 2514
Entity #4 | Chains: D
Actin-related protein 2/3 complex subunit 2 protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2770
95 % 16 20 3100 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 16 20 3156
70 % 16 20 3113
50 % 16 20 3049
40 % 16 21 2702
30 % 16 21 2516
Entity #5 | Chains: E
Actin-related protein 2/3 complex subunit 3 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2852
95 % 16 20 3181 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 16 20 3189
70 % 16 20 3146
50 % 16 21 2748
40 % 16 21 2694
30 % 16 21 2509
Entity #6 | Chains: F
Actin-related protein 2/3 complex subunit 4 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2853
95 % 16 20 3182 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 16 20 3245
70 % 16 20 3193
50 % 16 21 2747
40 % 16 21 2693
30 % 16 21 2508
Entity #7 | Chains: G
Actin-related protein 2/3 complex subunit 5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 20 2771
95 % 16 20 3101 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 16 20 3157
70 % 16 20 3114
50 % 16 20 3050
40 % 16 20 2955
30 % 16 21 2517

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures