Sequence Similarity Clusters for the Entities in PDB 3UKU

Entity #1 | Chains: A
ACTIN-LIKE PROTEIN 3 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2362
95 % 16 19 3001 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 16 19 3049
70 % 16 19 3035
50 % 16 20 2721
40 % 16 20 2680
30 % 154 231 53
Entity #2 | Chains: B
ACTIN-LIKE PROTEIN 2 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 18 2588
95 % 16 19 3008 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.2
PDBFlex
90 % 16 19 3057
70 % 16 19 3045
50 % 16 19 2988
40 % 139 211 41
30 % 155 231 53
Entity #3 | Chains: C
Actin-related protein 2/3 complex subunit 1B protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10071
95 % 16 19 3019 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 16 19 3067
70 % 16 19 3055
50 % 16 19 2998
40 % 16 20 2688
30 % 16 20 2523
Entity #4 | Chains: D
Actin-related protein 2/3 complex subunit 2 protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2421
95 % 16 19 3060 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 16 19 3110
70 % 16 19 3097
50 % 16 19 3040
40 % 16 20 2705
30 % 16 20 2536
Entity #5 | Chains: E
Actin-related protein 2/3 complex subunit 3 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2497
95 % 16 19 3139 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 16 19 3182
70 % 16 19 3158
50 % 16 20 2780
40 % 16 20 2744
30 % 16 20 2572
Entity #6 | Chains: F
Actin-related protein 2/3 complex subunit 4 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2499
95 % 16 19 3145 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 16 19 3189
70 % 16 19 3162
50 % 16 20 2784
40 % 16 20 2750
30 % 16 20 2576
Entity #7 | Chains: G
Actin-related protein 2/3 complex subunit 5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10537
95 % 16 19 3158 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.7
PDBFlex
90 % 16 19 3201
70 % 16 19 3174
50 % 16 19 3104
40 % 16 19 3025
30 % 16 19 2836

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.