Sequence Similarity Clusters for the Entities in PDB 3UKU

Entity #1 | Chains: A
ACTIN-LIKE PROTEIN 3 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2495
95 % 16 19 3154 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 16 19 3200
70 % 16 19 3170
50 % 16 20 2847
40 % 16 20 2799
30 % 155 254 42
Entity #2 | Chains: B
ACTIN-LIKE PROTEIN 2 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 18 2743
95 % 16 19 3164 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.1
PDBFlex
90 % 16 19 3211
70 % 16 19 3182
50 % 16 19 3116
40 % 140 234 24
30 % 156 254 42
Entity #3 | Chains: C
Actin-related protein 2/3 complex subunit 1B protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10583
95 % 16 19 3175 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 16 19 3221
70 % 16 19 3191
50 % 16 19 3125
40 % 16 20 2805
30 % 16 20 2629
Entity #4 | Chains: D
Actin-related protein 2/3 complex subunit 2 protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2558
95 % 16 19 3216 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 16 19 3266
70 % 16 19 3234
50 % 16 19 3166
40 % 16 20 2822
30 % 16 20 2642
Entity #5 | Chains: E
Actin-related protein 2/3 complex subunit 3 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2640
95 % 16 19 3300 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 16 19 3345
70 % 16 19 3302
50 % 16 20 2908
40 % 16 20 2856
30 % 16 20 2677
Entity #6 | Chains: F
Actin-related protein 2/3 complex subunit 4 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2642
95 % 16 19 3306 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 16 19 3353
70 % 16 19 3308
50 % 16 20 2912
40 % 16 20 2862
30 % 16 20 2681
Entity #7 | Chains: G
Actin-related protein 2/3 complex subunit 5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 11061
95 % 16 19 3322 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 16 19 3367
70 % 16 19 3322
50 % 16 19 3237
40 % 16 19 3147
30 % 16 19 2950

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures