Sequence Similarity Clusters for the Entities in PDB 3UKU

Entity #1 | Chains: A
ACTIN-LIKE PROTEIN 3 protein, length: 418 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2280
95 % 16 19 2912 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 16 19 2961
70 % 16 19 2947
50 % 16 20 2647
40 % 16 20 2616
30 % 152 223 54
Entity #2 | Chains: B
ACTIN-LIKE PROTEIN 2 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 18 2503
95 % 16 19 2919 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.2
PDBFlex
90 % 16 19 2969
70 % 16 19 2957
50 % 16 19 2897
40 % 137 203 47
30 % 153 223 54
Entity #3 | Chains: C
Actin-related protein 2/3 complex subunit 1B protein, length: 372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 9773
95 % 16 19 2929
90 % 16 19 2978
70 % 16 19 2965
50 % 16 19 2906
40 % 16 20 2625
30 % 16 20 2454
Entity #4 | Chains: D
Actin-related protein 2/3 complex subunit 2 protein, length: 300 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2334
95 % 16 19 2968 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 16 19 3019
70 % 16 19 3005
50 % 16 19 2943
40 % 16 20 2640
30 % 16 20 2466
Entity #5 | Chains: E
Actin-related protein 2/3 complex subunit 3 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2410
95 % 16 19 3046 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 16 19 3088
70 % 16 19 3067
50 % 16 20 2705
40 % 16 20 2672
30 % 16 20 2495
Entity #6 | Chains: F
Actin-related protein 2/3 complex subunit 4 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 19 2412
95 % 16 19 3051 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 16 19 3094
70 % 16 19 3071
50 % 16 20 2708
40 % 16 20 2677
30 % 16 20 2498
Entity #7 | Chains: G
Actin-related protein 2/3 complex subunit 5 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10215
95 % 16 19 3064 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 16 19 3106
70 % 16 19 3083
50 % 16 19 3003
40 % 16 19 2933
30 % 16 19 2744

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.