Sequence Similarity Clusters for the Entities in PDB 3UGP

Entity #1 | Chains: A
RNA polymerase sigma factor protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12274
95 % 2 4 11854 Flexibility: Low
Max RMSD: 14.9, Avg RMSD: 2.1
PDBFlex
90 % 2 4 11686
70 % 2 4 11025
50 % 2 4 9886
40 % 2 4 8967
30 % 2 4 7816
Entity #2 | Chains: B,C
5'-D(*TP*GP*TP*AP*TP*AP*AP*TP*GP*GP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.