Sequence Similarity Clusters for the Entities in PDB 3UGP

Entity #1 | Chains: A
RNA polymerase sigma factor protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 14133
95 % 2 4 13259 Flexibility: Low
Max RMSD: 14.9, Avg RMSD: 2.6
PDBFlex
90 % 2 4 13036
70 % 2 4 12244
50 % 2 4 10902
40 % 2 4 9827
30 % 2 4 8401
Entity #2 | Chains: B,C
5'-D(*TP*GP*TP*AP*TP*AP*AP*TP*GP*GP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures