POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

Crystal structure of RNA-polymerase sigma subunit domain 2 complexed with -10 promoter element ssDNA oligo (TATAAT)
Sequence Clustering and Redundancy Reduction Results
3UGP
Sequence Clusters for the Sequence Entities in PDB 3UGP
Entity #1: Chains: A - RNA polymerase sigma factor protein, length: 245 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9368
95% 2 4 9282
90% 2 4 9179
70% 2 4 8735
50% 2 4 7914
40% 2 4 7208
30% 2 4 6381
Entity #2: Chains: B,C - 5'-D(*TP*GP*TP*AP*TP*AP*AP*TP*GP*GP*G)-3' dna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.