Sequence Similarity Clusters for the Entities in PDB 3UGO

Entity #1 | Chains: A
RNA polymerase sigma factor protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 12976
95 % 1 4 12499 Flexibility: Low
Max RMSD: 14.9, Avg RMSD: 2.6
PDBFlex
90 % 1 4 12325
70 % 1 4 11638
50 % 1 4 10407
40 % 1 4 9436
30 % 1 4 8233
Entity #2 | Chains: B,C
5'-D(*TP*GP*TP*AP*CP*AP*AP*TP*GP*GP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures