Sequence Similarity Clusters for the Entities in PDB 3UBP

Entity #1 | Chains: A
PROTEIN (UREASE GAMMA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 7311
95 % 10 13 5084 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 10 13 5095
70 % 15 44 1229
50 % 15 46 1043
40 % 15 46 1054
30 % 15 46 1035
Entity #2 | Chains: B
PROTEIN (UREASE BETA SUBUNIT) protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 13 4279
95 % 10 13 5064 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 10 13 5079
70 % 10 13 5014
50 % 10 13 4804
40 % 10 13 4549
30 % 10 13 4165
Entity #3 | Chains: C
PROTEIN (UREASE ALPHA SUBUNIT) protein, length: 570 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 7550
95 % 10 13 4861 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 10 13 4871
70 % 10 13 4784
50 % 15 49 902
40 % 15 49 928
30 % 15 49 910

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.