Sequence Similarity Clusters for the Entities in PDB 3UBP

Entity #1 | Chains: A
PROTEIN (UREASE GAMMA SUBUNIT) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 7503
95 % 10 13 5242 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 10 13 5261
70 % 15 44 1261
50 % 15 46 1077
40 % 15 46 1085
30 % 15 46 1067
Entity #2 | Chains: B
PROTEIN (UREASE BETA SUBUNIT) protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 13 4432
95 % 10 13 5222 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 10 13 5243
70 % 10 13 5153
50 % 10 13 4932
40 % 10 13 4672
30 % 10 13 4276
Entity #3 | Chains: C
PROTEIN (UREASE ALPHA SUBUNIT) protein, length: 570 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 7745
95 % 10 13 5014 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 10 13 5029
70 % 10 13 4916
50 % 15 49 923
40 % 15 49 951
30 % 15 49 930

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures