Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45410
95 % 1 1 34020 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 32526
70 % 2 5 9100
50 % 2 5 8223
40 % 2 5 7536
30 % 2 5 6651
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15017
95 % 2 5 6304 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.7
PDBFlex
90 % 2 5 6287
70 % 644 2244 2
50 % 1336 4633 1
40 % 1336 4633 1
30 % 1494 5461 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7177
95 % 2 6 5758 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.5
PDBFlex
90 % 18 75 259
70 % 651 2287 1
50 % 1337 4633 1
40 % 1337 4633 1
30 % 1495 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.