Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38901
95 % 1 1 29203
90 % 1 1 27995
70 % 2 4 8457
50 % 2 4 7716
40 % 2 4 7110
30 % 2 4 6314
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17072
95 % 2 4 5846
90 % 2 4 5838
70 % 516 1782 1
50 % 1062 3677 1
40 % 1063 3678 1
30 % 1170 4338 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7546
95 % 2 5 5341
90 % 12 49 320
70 % 95 310 15
50 % 1063 3677 1
40 % 1064 3678 1
30 % 1171 4338 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.