Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44747
95 % 1 1 33525 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 32068
70 % 2 5 8951
50 % 2 5 8097
40 % 2 5 7428
30 % 2 5 6554
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14778
95 % 2 5 6217 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.9
PDBFlex
90 % 2 5 6199
70 % 637 2222 2
50 % 1322 4587 1
40 % 1322 4587 1
30 % 1474 5392 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 7077
95 % 2 6 5654
90 % 16 72 262
70 % 644 2264 1
50 % 1323 4587 1
40 % 1323 4587 1
30 % 1475 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.