Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43141
95 % 1 1 32317
90 % 1 1 30944
70 % 2 4 9416
50 % 2 4 8568
40 % 2 4 7853
30 % 2 4 6932
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19099
95 % 2 4 6509
90 % 2 4 6496
70 % 613 2096 1
50 % 1273 4337 1
40 % 1273 4337 1
30 % 1412 5109 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8524
95 % 2 5 5968
90 % 13 64 278
70 % 116 377 9
50 % 1274 4337 1
40 % 1274 4337 1
30 % 1413 5109 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.