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Crystal Structure of PG9 Fab in Complex with V1V2 Region from HIV-1 strain CAP45
Sequence Clustering and Redundancy Reduction Results
3U4E
Sequence Clusters for the Sequence Entities in PDB 3U4E
Entity #1: Chains: G,J - V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 33999
95% 1 1 25705
90% 1 1 24740
70% 2 3 10258
50% 2 3 9213
40% 2 3 8417
30% 2 3 7396
Entity #2: Chains: A,H - PG9 Heavy Chain protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 14880
95% 2 3 6699
90% 2 3 6653
70% 427 1471 2
50% 880 3051 1
40% 881 3052 1
30% 966 3610 1
Entity #3: Chains: B,L - PG9 Light Chain protein, length: 216 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 6484
95% 2 4 5682
90% 7 21 673
70% 74 237 16
50% 881 3051 1
40% 882 3052 1
30% 967 3610 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.