Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46392
95 % 1 1 34732
90 % 1 1 33181
70 % 2 5 9265
50 % 2 5 8385
40 % 2 5 7685
30 % 2 5 6774
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 15399
95 % 2 5 6455
90 % 2 5 6440
70 % 677 2342 2
50 % 1405 4843 1
40 % 1405 4843 1
30 % 1572 5705 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 7363
95 % 2 6 5896
90 % 23 86 243
70 % 685 2392 1
50 % 1406 4843 1
40 % 1406 4843 1
30 % 1573 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures