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Crystal Structure of PG9 Fab in Complex with V1V2 Region from HIV-1 strain CAP45
Sequence Clustering and Redundancy Reduction Results
3U4E
Sequence Clusters for the Sequence Entities in PDB 3U4E
Entity #1: Chains: G,J - V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 34126
95% 1 1 25800
90% 1 1 24834
70% 2 3 10290
50% 2 3 9241
40% 2 3 8439
30% 2 3 7415
Entity #2: Chains: A,H - PG9 Heavy Chain protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 14933
95% 2 3 6724
90% 2 3 6677
70% 432 1480 2
50% 890 3070 1
40% 891 3071 1
30% 976 3629 1
Entity #3: Chains: B,L - PG9 Light Chain protein, length: 216 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 6510
95% 2 4 5702
90% 7 21 676
70% 75 238 16
50% 891 3070 1
40% 892 3071 1
30% 977 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.