Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40955
95 % 1 1 30685
90 % 1 1 29399
70 % 2 4 8958
50 % 2 4 8163
40 % 2 4 7508
30 % 2 4 6656
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18077
95 % 2 4 6161
90 % 2 4 6151
70 % 568 1938 1
50 % 1172 3997 1
40 % 1173 3998 1
30 % 1296 4727 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8022
95 % 2 5 5637
90 % 12 52 320
70 % 103 341 10
50 % 1173 3997 1
40 % 1174 3998 1
30 % 1297 4727 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.