Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40647
95 % 1 1 30453
90 % 1 1 29180
70 % 2 4 8884
50 % 2 4 8103
40 % 2 4 7450
30 % 2 4 6611
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17924
95 % 2 4 6102
90 % 2 4 6096
70 % 555 1912 1
50 % 1142 3940 1
40 % 1143 3941 1
30 % 1265 4669 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7941
95 % 2 5 5585
90 % 12 52 317
70 % 99 335 11
50 % 1143 3940 1
40 % 1144 3941 1
30 % 1266 4669 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.