Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33440
95 % 1 1 34820 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 33285
70 % 2 5 9354
50 % 2 5 8495
40 % 2 5 7738
30 % 2 5 6702
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 8213
95 % 2 5 6785 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 2 5 6774
70 % 721 2478 2
50 % 1494 5107 1
40 % 1749 5756 1
30 % 2141 7175 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 5898
95 % 2 6 6124 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.4
PDBFlex
90 % 23 86 247
70 % 728 2519 1
50 % 1495 5107 1
40 % 1750 5756 1
30 % 2142 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures