Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45715
95 % 1 1 34240 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 32732
70 % 2 5 9153
50 % 2 5 8277
40 % 2 5 7585
30 % 2 5 6691
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15145
95 % 2 5 6365 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 2 5 6349
70 % 656 2280 2
50 % 1361 4713 1
40 % 1361 4713 1
30 % 1523 5567 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7235
95 % 2 6 5814 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.4
PDBFlex
90 % 20 80 245
70 % 664 2327 1
50 % 1362 4713 1
40 % 1362 4713 1
30 % 1524 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.