Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40562
95 % 1 1 30394
90 % 1 1 29126
70 % 2 4 8854
50 % 2 4 8078
40 % 2 4 7432
30 % 2 4 6598
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17879
95 % 2 4 6082
90 % 2 4 6077
70 % 553 1909 1
50 % 1138 3934 1
40 % 1139 3935 1
30 % 1261 4663 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7905
95 % 2 5 5566
90 % 12 52 316
70 % 99 335 11
50 % 1139 3934 1
40 % 1140 3935 1
30 % 1262 4663 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.