Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43700
95 % 1 1 32733
90 % 1 1 31337
70 % 2 4 9551
50 % 2 4 8685
40 % 2 4 7955
30 % 2 4 7009
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19375
95 % 2 4 6625
90 % 2 4 6606
70 % 617 2129 1
50 % 1281 4403 1
40 % 1281 4403 1
30 % 1429 5191 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8642
95 % 2 5 6065
90 % 13 64 282
70 % 116 384 9
50 % 1282 4403 1
40 % 1282 4403 1
30 % 1430 5191 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.