POP-OUT | CLOSE

An Information Portal to 109093 Biological Macromolecular Structures

Crystal Structure of PG9 Fab in Complex with V1V2 Region from HIV-1 strain CAP45
Sequence Clustering and Redundancy Reduction Results
3U4E
Sequence Clusters for the Sequence Entities in PDB 3U4E
Entity #1: Chains: G,J - V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 36391
95% 1 1 27432
90% 1 1 26361
70% 2 3 10873
50% 2 3 9761
40% 2 3 8914
30% 2 3 7795
Entity #2: Chains: A,H - PG9 Heavy Chain protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 15926
95% 2 3 7174
90% 2 3 7121
70% 456 1590 2
50% 939 3295 1
40% 940 3296 1
30% 1033 3893 1
Entity #3: Chains: B,L - PG9 Light Chain protein, length: 216 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 6999
95% 2 4 6114
90% 12 47 312
70% 83 260 18
50% 940 3295 1
40% 941 3296 1
30% 1034 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.