Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41227
95 % 1 1 30885
90 % 1 1 29593
70 % 2 4 9007
50 % 2 4 8210
40 % 2 4 7549
30 % 2 4 6684
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18217
95 % 2 4 6194
90 % 2 4 6184
70 % 571 1945 1
50 % 1179 4012 1
40 % 1180 4014 1
30 % 1305 4750 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8064
95 % 2 5 5668
90 % 12 52 320
70 % 103 342 10
50 % 1180 4012 1
40 % 1181 4014 1
30 % 1306 4750 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.