Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43223
95 % 1 1 32385
90 % 1 1 31012
70 % 2 4 9429
50 % 2 4 8579
40 % 2 4 7865
30 % 2 4 6943
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 19130
95 % 2 4 6526
90 % 2 4 6513
70 % 613 2101 1
50 % 1273 4347 1
40 % 1273 4347 1
30 % 1415 5126 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8538
95 % 2 5 5981
90 % 13 64 279
70 % 116 381 9
50 % 1274 4347 1
40 % 1274 4347 1
30 % 1416 5126 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.