Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44449
95 % 1 1 33313 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 31868
70 % 2 5 8879
50 % 2 5 8031
40 % 2 5 7365
30 % 2 5 6497
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14668
95 % 2 5 6146 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.9
PDBFlex
90 % 2 5 6130
70 % 634 2197 1
50 % 1316 4537 1
40 % 1316 4537 1
30 % 1468 5342 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7022
95 % 2 6 5605 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.6
PDBFlex
90 % 15 71 260
70 % 118 398 10
50 % 1317 4537 1
40 % 1317 4537 1
30 % 1469 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.