Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45127
95 % 1 1 33814
90 % 1 1 32334
70 % 2 5 9049
50 % 2 5 8185
40 % 2 5 7500
30 % 2 5 6617
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 14910
95 % 2 5 6269
90 % 2 5 6248
70 % 642 2238 2
50 % 1332 4619 1
40 % 1332 4619 1
30 % 1487 5440 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 7137
95 % 2 6 5705
90 % 18 75 258
70 % 649 2280 1
50 % 1333 4619 1
40 % 1333 4619 1
30 % 1488 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.