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Crystal Structure of PG9 Fab in Complex with V1V2 Region from HIV-1 strain CAP45
Sequence Clustering and Redundancy Reduction Results
3U4E
Sequence Clusters for the Sequence Entities in PDB 3U4E
Entity #1: Chains: G,J - V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 36131
95% 1 1 27241
90% 1 1 26188
70% 2 3 10802
50% 2 3 9704
40% 2 3 8860
30% 2 3 7752
Entity #2: Chains: A,H - PG9 Heavy Chain protein, length: 248 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 15810
95% 2 3 7114
90% 2 3 7062
70% 453 1564 2
50% 932 3242 1
40% 933 3243 1
30% 1024 3827 1
Entity #3: Chains: B,L - PG9 Light Chain protein, length: 216 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 6935
95% 2 4 6072
90% 12 47 312
70% 83 260 18
50% 933 3242 1
40% 934 3243 1
30% 1025 3827 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.