Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39754
95 % 1 1 29823
90 % 1 1 28586
70 % 2 4 8636
50 % 2 4 7881
40 % 2 4 7263
30 % 2 4 6451
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17476
95 % 2 4 5961
90 % 2 4 5954
70 % 536 1846 1
50 % 1102 3804 1
40 % 1103 3805 1
30 % 1217 4512 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7723
95 % 2 5 5453
90 % 12 51 313
70 % 97 324 14
50 % 1103 3804 1
40 % 1104 3805 1
30 % 1218 4512 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.