Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40284
95 % 1 1 30203
90 % 1 1 28932
70 % 2 4 8785
50 % 2 4 8013
40 % 2 4 7378
30 % 2 4 6550
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17740
95 % 2 4 6041
90 % 2 4 6035
70 % 550 1894 1
50 % 1131 3902 1
40 % 1132 3903 1
30 % 1254 4631 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7848
95 % 2 5 5531
90 % 12 51 315
70 % 97 328 13
50 % 1132 3902 1
40 % 1133 3903 1
30 % 1255 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.