Sequence Similarity Clusters for the Entities in PDB 3U4E

Entity #1 | Chains: G,J
V1V2 region of HIV-1 on 1FD6 scaffold protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42466
95 % 1 1 31785
90 % 1 1 30442
70 % 2 4 9295
50 % 2 4 8456
40 % 2 4 7749
30 % 2 4 6841
Entity #2 | Chains: A,H
PG9 Heavy Chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18797
95 % 2 4 6408
90 % 2 4 6400
70 % 592 2041 1
50 % 1231 4220 1
40 % 1231 4221 1
30 % 1358 4972 1
Entity #3 | Chains: B,L
PG9 Light Chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 8383
95 % 2 5 5855
90 % 12 52 331
70 % 106 357 10
50 % 1232 4220 1
40 % 1232 4221 1
30 % 1359 4972 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.