Sequence Similarity Clusters for the Entities in PDB 3U4B

Entity #1 | Chains: H
CH04 Heavy chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10161
95 % 3 4 10178 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 3 4 10063
70 % 1643 2222 2
50 % 3398 4587 1
40 % 3398 4587 1
30 % 3996 5392 1
Entity #2 | Chains: L
CH02 Light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27077
95 % 2 3 12142 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 515 693 3
70 % 1674 2264 1
50 % 3399 4587 1
40 % 3399 4587 1
30 % 3997 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.