Sequence Similarity Clusters for the Entities in PDB 3U4B

Entity #1 | Chains: H
CH04 Heavy chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10310
95 % 3 4 10342 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 3 4 10225
70 % 1655 2244 2
50 % 3424 4633 1
40 % 3424 4633 1
30 % 4039 5461 1
Entity #2 | Chains: L
CH02 Light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27562
95 % 2 3 12338 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 519 701 3
70 % 1687 2287 1
50 % 3425 4633 1
40 % 3425 4633 1
30 % 4040 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.