Sequence Similarity Clusters for the Entities in PDB 3U4B

Entity #1 | Chains: H
CH04 Heavy chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 11227
95 % 3 4 10849 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 3 4 10782
70 % 1819 2478 2
50 % 3761 5107 1
40 % 4255 5756 1
30 % 5313 7175 1
Entity #2 | Chains: L
CH02 Light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13757
95 % 2 3 12980 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 2 3 12765
70 % 1851 2519 1
50 % 3762 5107 1
40 % 4256 5756 1
30 % 5314 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures