Sequence Similarity Clusters for the Entities in PDB 3U4B

Entity #1 | Chains: H
CH04 Heavy chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10454
95 % 3 4 10474 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 3 4 10345
70 % 1704 2311 2
50 % 3535 4781 1
40 % 3535 4781 1
30 % 4174 5635 1
Entity #2 | Chains: L
CH02 Light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27887
95 % 2 3 12493 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 540 729 3
70 % 1744 2362 1
50 % 3536 4781 1
40 % 3536 4781 1
30 % 4175 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures