Sequence Similarity Clusters for the Entities in PDB 3U46

Entity #1 | Chains: A,H
CH04 Heavy chain Fab protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10454
95 % 2 4 10474 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 2 4 10345
70 % 1664 2311 2
50 % 3454 4781 1
40 % 3454 4781 1
30 % 4079 5635 1
Entity #2 | Chains: B,L
CH02 Light chain Fab protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27887
95 % 1 3 12493 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 529 729 3
70 % 1704 2362 1
50 % 3455 4781 1
40 % 3455 4781 1
30 % 4080 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures