Sequence Similarity Clusters for the Entities in PDB 3U46

Entity #1 | Chains: A,H
CH04 Heavy chain Fab protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10827
95 % 2 4 10815 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 2 4 10684
70 % 1750 2424 2
50 % 3630 5011 1
40 % 3630 5011 1
30 % 4324 5941 1
Entity #2 | Chains: B,L
CH02 Light chain Fab protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28750
95 % 1 3 12891 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 578 788 2
70 % 1789 2474 1
50 % 3631 5011 1
40 % 3631 5011 1
30 % 4325 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures