Sequence Similarity Clusters for the Entities in PDB 3U46

Entity #1 | Chains: A,H
CH04 Heavy chain Fab protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 11460
95 % 2 4 11046 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 2 4 10968
70 % 1825 2550 2
50 % 3780 5263 1
40 % 4279 5933 1
30 % 5337 7388 1
Entity #2 | Chains: B,L
CH02 Light chain Fab protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14036
95 % 1 3 13227 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 1 3 13001
70 % 1857 2593 1
50 % 3781 5263 1
40 % 4280 5933 1
30 % 5338 7388 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures