Sequence Similarity Clusters for the Entities in PDB 3U46

Entity #1 | Chains: A,H
CH04 Heavy chain Fab protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 11769
95 % 2 4 11335 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 2 4 11260
70 % 1874 2629 2
50 % 3878 5421 1
40 % 4391 6121 1
30 % 5453 7588 1
Entity #2 | Chains: B,L
CH02 Light chain Fab protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14404
95 % 1 3 13579 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 1 3 13327
70 % 1905 2670 1
50 % 3879 5421 1
40 % 4392 6121 1
30 % 5454 7588 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures